Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.54■□□□□ 0.88
CCDC65Q8IXS2 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 AC145285.6-201ENST00000604632 637 ntBASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CCDC65Q8IXS2 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 NAT14-202ENST00000587400 416 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 AC112497.1-201ENST00000624824 639 ntBASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.52■□□□□ 0.88
CCDC65Q8IXS2 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
CCDC65Q8IXS2 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CCDC65Q8IXS2 GRAMD4P1-201ENST00000435181 1110 ntBASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms