Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.48■■□□□ 1.03
CCDC144BQ3MJ40 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 AL450487.1-201ENST00000426799 995 ntBASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CCDC144BQ3MJ40 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 TSPY23P-201ENST00000440136 739 ntBASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 FGF14-AS2-201ENST00000606448 1074 ntBASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 AL031598.1-201ENST00000561511 1773 ntBASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CCDC144BQ3MJ40 AC141586.3-201ENST00000562166 1838 ntBASIC21.45■■□□□ 1.03
CCDC144BQ3MJ40 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 FP475955.4-201ENST00000623131 1990 ntBASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 SPDYE13P-201ENST00000445314 798 ntBASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 AC090164.3-201ENST00000610780 2143 ntBASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 ZNF815P-204ENST00000434898 1737 ntBASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC144BQ3MJ40 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms