Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC16.56■□□□□ 0.24
CLRN1P58418 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.56■□□□□ 0.24
CLRN1P58418 AC116562.4-202ENST00000641738 218 ntBASIC16.56■□□□□ 0.24
CLRN1P58418 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
CLRN1P58418 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC16.56■□□□□ 0.24
CLRN1P58418 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC16.56■□□□□ 0.24
CLRN1P58418 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
CLRN1P58418 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC16.55■□□□□ 0.24
CLRN1P58418 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.55■□□□□ 0.24
CLRN1P58418 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC16.55■□□□□ 0.24
CLRN1P58418 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC16.55■□□□□ 0.24
CLRN1P58418 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 AC073592.3-201ENST00000625118 1834 ntBASIC16.55■□□□□ 0.24
CLRN1P58418 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 PRR31-201ENST00000371629 978 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 MIR564-202ENST00000385049 94 ntBASIC16.55■□□□□ 0.24
CLRN1P58418 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 AP003041.3-201ENST00000527151 707 ntBASIC16.55■□□□□ 0.24
CLRN1P58418 AL353719.1-201ENST00000566847 864 ntBASIC16.55■□□□□ 0.24
CLRN1P58418 MIR3180-5-201ENST00000583743 153 ntBASIC16.55■□□□□ 0.24
CLRN1P58418 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC16.55■□□□□ 0.24
CLRN1P58418 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.55■□□□□ 0.24
CLRN1P58418 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.55■□□□□ 0.24
CLRN1P58418 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CLRN1P58418 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
CLRN1P58418 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC16.54■□□□□ 0.24
CLRN1P58418 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CLRN1P58418 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.54■□□□□ 0.24
CLRN1P58418 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.54■□□□□ 0.24
CLRN1P58418 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 BX088651.1-201ENST00000540551 451 ntBASIC16.54■□□□□ 0.24
CLRN1P58418 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CLRN1P58418 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CLRN1P58418 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC16.54■□□□□ 0.24
CLRN1P58418 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC16.54■□□□□ 0.24
CLRN1P58418 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.54■□□□□ 0.24
CLRN1P58418 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CLRN1P58418 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CLRN1P58418 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 AC034236.2-201ENST00000606662 1610 ntBASIC16.53■□□□□ 0.24
CLRN1P58418 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 AC036111.1-201ENST00000533973 1582 ntBASIC16.53■□□□□ 0.24
CLRN1P58418 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.53■□□□□ 0.24
CLRN1P58418 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
CLRN1P58418 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CLRN1P58418 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.53■□□□□ 0.24
CLRN1P58418 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 AL023803.3-201ENST00000615559 522 ntBASIC16.53■□□□□ 0.24
CLRN1P58418 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.53■□□□□ 0.24
CLRN1P58418 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC16.53■□□□□ 0.24
CLRN1P58418 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms