Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.95■□□□□ 0.46
FOXA1P55317 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.95■□□□□ 0.46
FOXA1P55317 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
FOXA1P55317 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
FOXA1P55317 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA1P55317 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
FOXA1P55317 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 MIR564-202ENST00000385049 94 ntBASIC17.94■□□□□ 0.46
FOXA1P55317 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.94■□□□□ 0.46
FOXA1P55317 FAM201B-201ENST00000458407 597 ntBASIC17.94■□□□□ 0.46
FOXA1P55317 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA1P55317 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA1P55317 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
FOXA1P55317 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA1P55317 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
FOXA1P55317 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC17.94■□□□□ 0.46
FOXA1P55317 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
FOXA1P55317 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
FOXA1P55317 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
FOXA1P55317 LTB4R2-202ENST00000528054 3092 ntBASIC17.93■□□□□ 0.46
FOXA1P55317 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.93■□□□□ 0.46
FOXA1P55317 KRT18P29-201ENST00000397031 1267 ntBASIC17.93■□□□□ 0.46
FOXA1P55317 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 MFAP1P1-201ENST00000442257 1255 ntBASIC17.93■□□□□ 0.46
FOXA1P55317 AC098590.1-201ENST00000468126 897 ntBASIC17.93■□□□□ 0.46
FOXA1P55317 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 AC116562.2-201ENST00000507042 360 ntBASIC17.93■□□□□ 0.46
FOXA1P55317 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC17.93■□□□□ 0.46
FOXA1P55317 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.93■□□□□ 0.46
FOXA1P55317 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.93■□□□□ 0.46
FOXA1P55317 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.93■□□□□ 0.46
FOXA1P55317 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.93■□□□□ 0.46
FOXA1P55317 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
FOXA1P55317 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
FOXA1P55317 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17.93■□□□□ 0.46
FOXA1P55317 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
FOXA1P55317 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.93■□□□□ 0.46
FOXA1P55317 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
FOXA1P55317 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.92■□□□□ 0.46
FOXA1P55317 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.92■□□□□ 0.46
FOXA1P55317 SLC25A1P4-201ENST00000567977 778 ntBASIC17.92■□□□□ 0.46
FOXA1P55317 AC138028.4-201ENST00000564984 1845 ntBASIC17.92■□□□□ 0.46
FOXA1P55317 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.92■□□□□ 0.46
FOXA1P55317 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.92■□□□□ 0.46
FOXA1P55317 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
FOXA1P55317 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC17.92■□□□□ 0.46
FOXA1P55317 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
FOXA1P55317 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
FOXA1P55317 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.91■□□□□ 0.46
FOXA1P55317 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
FOXA1P55317 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
FOXA1P55317 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 AC134043.2-201ENST00000624206 2238 ntBASIC17.91■□□□□ 0.46
FOXA1P55317 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
FOXA1P55317 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
FOXA1P55317 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
FOXA1P55317 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
FOXA1P55317 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms