Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.38■□□□□ 0.21
SGCEO43556 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
SGCEO43556 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SGCEO43556 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 AL109659.2-201ENST00000606809 1674 ntBASIC16.37■□□□□ 0.21
SGCEO43556 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.37■□□□□ 0.21
SGCEO43556 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 AC079598.2-202ENST00000546624 1451 ntBASIC16.37■□□□□ 0.21
SGCEO43556 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SGCEO43556 ENSA-205ENST00000361532 792 ntTSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 AL355075.4-201ENST00000554988 638 ntBASIC16.37■□□□□ 0.21
SGCEO43556 SNX21-213ENST00000614929 587 ntTSL 5 BASIC16.37■□□□□ 0.21
SGCEO43556 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.37■□□□□ 0.21
SGCEO43556 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC16.37■□□□□ 0.21
SGCEO43556 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SGCEO43556 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC16.37■□□□□ 0.21
SGCEO43556 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SGCEO43556 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 AC011270.2-201ENST00000624293 2550 ntBASIC16.36■□□□□ 0.21
SGCEO43556 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 AL357033.4-201ENST00000617703 1807 ntBASIC16.36■□□□□ 0.21
SGCEO43556 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 MIR1238-201ENST00000408483 83 ntBASIC16.36■□□□□ 0.21
SGCEO43556 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 MCCD1P1-208ENST00000445732 328 ntBASIC16.36■□□□□ 0.21
SGCEO43556 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 AC093827.2-201ENST00000512654 315 ntBASIC16.36■□□□□ 0.21
SGCEO43556 FITM1-202ENST00000559294 800 ntBASIC16.36■□□□□ 0.21
SGCEO43556 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SGCEO43556 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SGCEO43556 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
SGCEO43556 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.35■□□□□ 0.21
SGCEO43556 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.35■□□□□ 0.21
SGCEO43556 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.35■□□□□ 0.21
SGCEO43556 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SGCEO43556 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SGCEO43556 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SGCEO43556 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 AL023284.2-201ENST00000405850 579 ntBASIC16.35■□□□□ 0.21
SGCEO43556 AL390955.1-201ENST00000428694 934 ntBASIC16.35■□□□□ 0.21
SGCEO43556 SLC25A1P2-201ENST00000430693 912 ntBASIC16.35■□□□□ 0.21
SGCEO43556 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.35■□□□□ 0.21
SGCEO43556 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC16.35■□□□□ 0.21
SGCEO43556 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.35■□□□□ 0.21
SGCEO43556 MYC-208ENST00000641036 567 ntBASIC16.35■□□□□ 0.21
SGCEO43556 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.35■□□□□ 0.21
SGCEO43556 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
SGCEO43556 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SGCEO43556 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SGCEO43556 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.35■□□□□ 0.21
SGCEO43556 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms