Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC20.76■□□□□ 0.91
MSH4O15457 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.76■□□□□ 0.91
MSH4O15457 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
MSH4O15457 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH4O15457 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH4O15457 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
MSH4O15457 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH4O15457 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH4O15457 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 WIZP1-201ENST00000531444 2299 ntBASIC20.75■□□□□ 0.91
MSH4O15457 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 FXN-203ENST00000396366 922 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.75■□□□□ 0.91
MSH4O15457 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 AC116407.4-201ENST00000623319 1061 ntBASIC20.75■□□□□ 0.91
MSH4O15457 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 ADK-206ENST00000541550 2222 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC20.75■□□□□ 0.91
MSH4O15457 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.75■□□□□ 0.91
MSH4O15457 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
MSH4O15457 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH4O15457 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.75■□□□□ 0.91
MSH4O15457 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
MSH4O15457 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
MSH4O15457 AL138781.2-201ENST00000617896 1843 ntBASIC20.74■□□□□ 0.91
MSH4O15457 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
MSH4O15457 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
MSH4O15457 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.74■□□□□ 0.91
MSH4O15457 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC20.74■□□□□ 0.91
MSH4O15457 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH4O15457 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH4O15457 DBP-204ENST00000599385 709 ntTSL 3 BASIC20.74■□□□□ 0.91
MSH4O15457 NDUFV2-AS1-203ENST00000608008 779 ntBASIC20.74■□□□□ 0.91
MSH4O15457 SPEG-225ENST00000617028 815 ntTSL 5 BASIC20.74■□□□□ 0.91
MSH4O15457 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
MSH4O15457 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
MSH4O15457 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH4O15457 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH4O15457 AL162741.1-201ENST00000565563 1558 ntBASIC20.73■□□□□ 0.91
MSH4O15457 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH4O15457 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH4O15457 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH4O15457 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 AL645929.1-201ENST00000420084 975 ntBASIC20.73■□□□□ 0.91
MSH4O15457 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH4O15457 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH4O15457 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH4O15457 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC20.73■□□□□ 0.91
MSH4O15457 LITAF-220ENST00000620789 692 ntTSL 5 BASIC20.73■□□□□ 0.91
MSH4O15457 AP000550.4-202ENST00000639755 178 ntBASIC20.73■□□□□ 0.91
MSH4O15457 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC20.73■□□□□ 0.91
MSH4O15457 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
MSH4O15457 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH4O15457 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
MSH4O15457 IER3-202ENST00000376377 1350 ntBASIC20.72■□□□□ 0.91
MSH4O15457 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC20.72■□□□□ 0.91
MSH4O15457 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
MSH4O15457 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.72■□□□□ 0.91
MSH4O15457 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms