Protein–RNA interactions for Protein: Q9Y3T6

R3HCC1, R3H and coiled-coil domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 440 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
R3HCC1Q9Y3T6 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
R3HCC1Q9Y3T6 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
R3HCC1Q9Y3T6 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 YBX1P10-201ENST00000444752 975 ntBASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 AC093525.10-201ENST00000625130 1569 ntBASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
R3HCC1Q9Y3T6 AC008764.6-201ENST00000595909 2069 ntBASIC21.2■□□□□ 0.99
R3HCC1Q9Y3T6 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
R3HCC1Q9Y3T6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 SERF2-207ENST00000409614 582 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 LINC00896-202ENST00000609602 2128 ntBASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
R3HCC1Q9Y3T6 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 KRT16P5-201ENST00000455284 522 ntBASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 AC080080.1-201ENST00000625121 2420 ntBASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
R3HCC1Q9Y3T6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC21.18■□□□□ 0.98
R3HCC1Q9Y3T6 TUBB8P6-201ENST00000436895 1288 ntBASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms