Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.46■□□□□ 0.54
VPS9D1Q9Y2B5 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 IL12A-202ENST00000466512 1283 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 AC128688.1-201ENST00000487626 519 ntBASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 AP003041.3-201ENST00000527151 707 ntBASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 AL355075.4-201ENST00000554988 638 ntBASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 AC092338.2-201ENST00000568827 1415 ntBASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 ADK-206ENST00000541550 2222 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 AC135050.7-201ENST00000624508 2218 ntBASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS9D1Q9Y2B5 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 HTR7P1-202ENST00000624664 4411 ntBASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 TSPY14P-201ENST00000303979 915 ntBASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 GXYLT1P6-201ENST00000456472 1187 ntBASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 EGLN1P1-201ENST00000531623 762 ntBASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 WWOX-216ENST00000569818 525 ntBASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS9D1Q9Y2B5 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 HOXB1-202ENST00000577092 1414 ntBASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 BICD1-207ENST00000551848 1962 ntBASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 PRR31-201ENST00000371629 978 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 AC066615.1-201ENST00000640911 628 ntBASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 COMP-202ENST00000425807 2292 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS9D1Q9Y2B5 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 AL390955.1-201ENST00000428694 934 ntBASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 AC009065.1-201ENST00000564055 1225 ntBASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 MIR4674-201ENST00000582457 87 ntBASIC18.42■□□□□ 0.54
VPS9D1Q9Y2B5 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms