Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
TRIM56Q9BRZ2 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 PRSS44-201ENST00000515154 1146 ntBASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 AP006294.2-201ENST00000641667 209 ntBASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 AL357033.4-201ENST00000617703 1807 ntBASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
TRIM56Q9BRZ2 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 OR6D1P-202ENST00000641007 5290 ntBASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 AC073592.3-201ENST00000625118 1834 ntBASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.92■□□□□ 0.62
TRIM56Q9BRZ2 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 KRT8P3-201ENST00000519669 1449 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 AC099343.3-201ENST00000605834 2503 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 NOC2LP1-202ENST00000452600 2235 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 FAM197Y1-201ENST00000421178 764 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 B3GAT3P1-201ENST00000471720 806 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 RARRES2P10-201ENST00000564312 460 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 AC130371.2-201ENST00000619443 611 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 FAM197Y4-202ENST00000622692 608 ntBASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TRIM56Q9BRZ2 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms