Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
VMP1Q96GC9 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 TSPY14P-201ENST00000303979 915 ntBASIC17.76■□□□□ 0.43
VMP1Q96GC9 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 AC128688.1-201ENST00000487626 519 ntBASIC17.76■□□□□ 0.43
VMP1Q96GC9 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.76■□□□□ 0.43
VMP1Q96GC9 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VMP1Q96GC9 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 TP73-202ENST00000354437 2140 ntTSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 KRT18P22-201ENST00000402024 1347 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 AC011270.2-201ENST00000624293 2550 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 HIST1H2APS4-201ENST00000362070 348 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 SLC25A1P2-201ENST00000430693 912 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 TSPY23P-201ENST00000440136 739 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 CCR12P-201ENST00000446203 998 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 AC068880.1-201ENST00000507289 2297 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 FZD10-202ENST00000539839 3282 ntBASIC17.75■□□□□ 0.43
VMP1Q96GC9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VMP1Q96GC9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
VMP1Q96GC9 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CA15P1-201ENST00000481698 905 ntBASIC17.74■□□□□ 0.43
VMP1Q96GC9 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
VMP1Q96GC9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VMP1Q96GC9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms