Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB4Q8WW32 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB4Q8WW32 AC141586.3-201ENST00000562166 1838 ntBASIC18.58■□□□□ 0.57
HMGB4Q8WW32 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB4Q8WW32 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.58■□□□□ 0.57
HMGB4Q8WW32 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 AC079776.4-201ENST00000511039 504 ntBASIC18.58■□□□□ 0.56
HMGB4Q8WW32 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 BMF-207ENST00000559701 630 ntTSL 3 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC18.58■□□□□ 0.56
HMGB4Q8WW32 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AL022342.1-201ENST00000400363 863 ntBASIC18.57■□□□□ 0.56
HMGB4Q8WW32 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AP002469.2-201ENST00000531724 424 ntBASIC18.57■□□□□ 0.56
HMGB4Q8WW32 PPOX-214ENST00000535223 664 ntTSL 3 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AC009065.1-201ENST00000564055 1225 ntBASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AL353801.3-201ENST00000609898 542 ntBASIC18.57■□□□□ 0.56
HMGB4Q8WW32 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC18.57■□□□□ 0.56
HMGB4Q8WW32 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HMGB4Q8WW32 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 AL158211.5-201ENST00000623583 2518 ntBASIC18.56■□□□□ 0.56
HMGB4Q8WW32 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 KRT16P4-201ENST00000453883 522 ntBASIC18.56■□□□□ 0.56
HMGB4Q8WW32 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 VENTXP7-201ENST00000475503 772 ntBASIC18.56■□□□□ 0.56
HMGB4Q8WW32 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 AC068587.9-201ENST00000641814 219 ntBASIC18.56■□□□□ 0.56
HMGB4Q8WW32 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HMGB4Q8WW32 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 AL121912.1-201ENST00000603683 238 ntBASIC18.55■□□□□ 0.56
HMGB4Q8WW32 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
HMGB4Q8WW32 Z98044.1-201ENST00000632503 1764 ntBASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms