Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CIITAP33076 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CIITAP33076 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CIITAP33076 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
CIITAP33076 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC20.87■□□□□ 0.93
CIITAP33076 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CIITAP33076 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC20.86■□□□□ 0.93
CIITAP33076 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
CIITAP33076 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
CIITAP33076 VENTXP5-201ENST00000523979 775 ntBASIC20.86■□□□□ 0.93
CIITAP33076 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.86■□□□□ 0.93
CIITAP33076 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.86■□□□□ 0.93
CIITAP33076 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CIITAP33076 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 AL138781.2-201ENST00000617896 1843 ntBASIC20.85■□□□□ 0.93
CIITAP33076 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.85■□□□□ 0.93
CIITAP33076 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 SNCG-201ENST00000348795 684 ntTSL 2 BASIC20.85■□□□□ 0.93
CIITAP33076 PTK2-216ENST00000519881 863 ntTSL 3 BASIC20.85■□□□□ 0.93
CIITAP33076 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
CIITAP33076 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.85■□□□□ 0.93
CIITAP33076 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CIITAP33076 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC20.84■□□□□ 0.93
CIITAP33076 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.84■□□□□ 0.93
CIITAP33076 AC005332.1-201ENST00000577698 1310 ntBASIC20.84■□□□□ 0.93
CIITAP33076 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.84■□□□□ 0.93
CIITAP33076 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.84■□□□□ 0.93
CIITAP33076 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.84■□□□□ 0.93
CIITAP33076 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC20.84■□□□□ 0.93
CIITAP33076 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CIITAP33076 AC116407.4-201ENST00000623319 1061 ntBASIC20.84■□□□□ 0.93
CIITAP33076 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.84■□□□□ 0.93
CIITAP33076 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC20.84■□□□□ 0.93
CIITAP33076 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC20.84■□□□□ 0.93
CIITAP33076 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC20.84■□□□□ 0.93
CIITAP33076 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CIITAP33076 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 AC073592.3-201ENST00000625118 1834 ntBASIC20.83■□□□□ 0.93
CIITAP33076 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.93
CIITAP33076 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
CIITAP33076 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC20.83■□□□□ 0.93
CIITAP33076 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.83■□□□□ 0.93
CIITAP33076 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
CIITAP33076 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
CIITAP33076 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CIITAP33076 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
CIITAP33076 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CIITAP33076 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
CIITAP33076 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CIITAP33076 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CIITAP33076 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CIITAP33076 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
CIITAP33076 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC20.83■□□□□ 0.92
CIITAP33076 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
CIITAP33076 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC20.82■□□□□ 0.92
CIITAP33076 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
CIITAP33076 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
CIITAP33076 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CIITAP33076 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms