Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
USF1P22415 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC15.7■□□□□ 0.1
USF1P22415 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.7■□□□□ 0.1
USF1P22415 AL023284.2-201ENST00000405850 579 ntBASIC15.7■□□□□ 0.1
USF1P22415 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC15.7■□□□□ 0.1
USF1P22415 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC15.7■□□□□ 0.1
USF1P22415 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC15.7■□□□□ 0.1
USF1P22415 SPDYE13P-201ENST00000445314 798 ntBASIC15.7■□□□□ 0.1
USF1P22415 MCCD1P1-208ENST00000445732 328 ntBASIC15.7■□□□□ 0.1
USF1P22415 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 AC092597.1-201ENST00000487352 616 ntBASIC15.7■□□□□ 0.1
USF1P22415 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC15.7■□□□□ 0.1
USF1P22415 AC092119.3-201ENST00000612618 583 ntBASIC15.7■□□□□ 0.1
USF1P22415 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC15.7■□□□□ 0.1
USF1P22415 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.7■□□□□ 0.1
USF1P22415 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USF1P22415 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
USF1P22415 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
USF1P22415 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
USF1P22415 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
USF1P22415 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.69■□□□□ 0.1
USF1P22415 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
USF1P22415 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
USF1P22415 BX276092.5-203ENST00000456199 560 ntBASIC15.69■□□□□ 0.1
USF1P22415 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 MIR3652-201ENST00000579335 131 ntBASIC15.69■□□□□ 0.1
USF1P22415 MIR3180-5-201ENST00000583743 153 ntBASIC15.69■□□□□ 0.1
USF1P22415 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
USF1P22415 AC092329.2-201ENST00000598402 547 ntBASIC15.69■□□□□ 0.1
USF1P22415 AL121672.3-201ENST00000608644 468 ntBASIC15.69■□□□□ 0.1
USF1P22415 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC15.69■□□□□ 0.1
USF1P22415 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 AC036111.1-201ENST00000533973 1582 ntBASIC15.69■□□□□ 0.1
USF1P22415 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
USF1P22415 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
USF1P22415 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USF1P22415 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC15.68■□□□□ 0.1
USF1P22415 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.68■□□□□ 0.1
USF1P22415 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 SDHAP1-207ENST00000440850 2000 ntBASIC15.68■□□□□ 0.1
USF1P22415 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.68■□□□□ 0.1
USF1P22415 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
USF1P22415 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 AL032819.2-201ENST00000624543 2162 ntBASIC15.68■□□□□ 0.1
USF1P22415 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
USF1P22415 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
USF1P22415 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC15.68■□□□□ 0.1
USF1P22415 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms