Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MSH3P20585 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MSH3P20585 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
MSH3P20585 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.46■□□□□ 0.55
MSH3P20585 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC18.46■□□□□ 0.55
MSH3P20585 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.46■□□□□ 0.55
MSH3P20585 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
MSH3P20585 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.54
MSH3P20585 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 SNAI3-AS1-205ENST00000568633 2096 ntBASIC18.45■□□□□ 0.54
MSH3P20585 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH3P20585 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH3P20585 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.45■□□□□ 0.54
MSH3P20585 KRT18P57-201ENST00000443599 1254 ntBASIC18.45■□□□□ 0.54
MSH3P20585 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.45■□□□□ 0.54
MSH3P20585 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
MSH3P20585 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.45■□□□□ 0.54
MSH3P20585 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
MSH3P20585 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.45■□□□□ 0.54
MSH3P20585 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.45■□□□□ 0.54
MSH3P20585 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 AC034236.2-201ENST00000606662 1610 ntBASIC18.45■□□□□ 0.54
MSH3P20585 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
MSH3P20585 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC18.45■□□□□ 0.54
MSH3P20585 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
MSH3P20585 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH3P20585 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.44■□□□□ 0.54
MSH3P20585 AP000523.1-201ENST00000398242 1049 ntBASIC18.44■□□□□ 0.54
MSH3P20585 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH3P20585 AL138966.2-201ENST00000621997 464 ntBASIC18.44■□□□□ 0.54
MSH3P20585 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
MSH3P20585 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH3P20585 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
MSH3P20585 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC18.44■□□□□ 0.54
MSH3P20585 TMTC1-203ENST00000539277 2758 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC18.43■□□□□ 0.54
MSH3P20585 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.43■□□□□ 0.54
MSH3P20585 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
MSH3P20585 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.43■□□□□ 0.54
MSH3P20585 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
MSH3P20585 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 NEFHP1-201ENST00000412845 2629 ntBASIC18.43■□□□□ 0.54
MSH3P20585 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
MSH3P20585 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 ANO7L1-203ENST00000602586 1720 ntBASIC18.43■□□□□ 0.54
MSH3P20585 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
MSH3P20585 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms