Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.5■□□□□ 0.55
XRCC1P18887 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.5■□□□□ 0.55
XRCC1P18887 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.5■□□□□ 0.55
XRCC1P18887 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 AC068880.1-201ENST00000507289 2297 ntBASIC18.5■□□□□ 0.55
XRCC1P18887 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC18.5■□□□□ 0.55
XRCC1P18887 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.5■□□□□ 0.55
XRCC1P18887 BX664615.1-201ENST00000443558 458 ntBASIC18.5■□□□□ 0.55
XRCC1P18887 AC104076.2-201ENST00000448912 469 ntBASIC18.5■□□□□ 0.55
XRCC1P18887 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.5■□□□□ 0.55
XRCC1P18887 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.5■□□□□ 0.55
XRCC1P18887 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
XRCC1P18887 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
XRCC1P18887 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.5■□□□□ 0.55
XRCC1P18887 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.5■□□□□ 0.55
XRCC1P18887 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC18.5■□□□□ 0.55
XRCC1P18887 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
XRCC1P18887 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.5■□□□□ 0.55
XRCC1P18887 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC18.5■□□□□ 0.55
XRCC1P18887 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
XRCC1P18887 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.49■□□□□ 0.55
XRCC1P18887 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 AL049597.2-201ENST00000565575 961 ntBASIC18.49■□□□□ 0.55
XRCC1P18887 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
XRCC1P18887 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
XRCC1P18887 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
XRCC1P18887 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
XRCC1P18887 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
XRCC1P18887 Z98044.1-201ENST00000632503 1764 ntBASIC18.48■□□□□ 0.55
XRCC1P18887 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.48■□□□□ 0.55
XRCC1P18887 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.48■□□□□ 0.55
XRCC1P18887 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.48■□□□□ 0.55
XRCC1P18887 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.48■□□□□ 0.55
XRCC1P18887 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.48■□□□□ 0.55
XRCC1P18887 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
XRCC1P18887 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
XRCC1P18887 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
XRCC1P18887 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
XRCC1P18887 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
XRCC1P18887 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC18.48■□□□□ 0.55
XRCC1P18887 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
XRCC1P18887 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
XRCC1P18887 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
XRCC1P18887 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC18.47■□□□□ 0.55
XRCC1P18887 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms