Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
COL3A1P02461 KRT18P48-201ENST00000434763 852 ntBASIC24.45■■□□□ 1.51
COL3A1P02461 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC24.45■■□□□ 1.51
COL3A1P02461 TSSC2-201ENST00000450217 709 ntBASIC24.45■■□□□ 1.51
COL3A1P02461 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC24.45■■□□□ 1.51
COL3A1P02461 AL121672.3-201ENST00000608644 468 ntBASIC24.45■■□□□ 1.51
COL3A1P02461 AC004263.2-201ENST00000617183 678 ntBASIC24.45■■□□□ 1.51
COL3A1P02461 AC073592.3-201ENST00000625118 1834 ntBASIC24.45■■□□□ 1.5
COL3A1P02461 METTL21A-208ENST00000448007 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
COL3A1P02461 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC24.45■■□□□ 1.5
COL3A1P02461 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
COL3A1P02461 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC24.45■■□□□ 1.5
COL3A1P02461 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC24.45■■□□□ 1.5
COL3A1P02461 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC24.45■■□□□ 1.5
COL3A1P02461 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC24.45■■□□□ 1.5
COL3A1P02461 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 AC005332.3-201ENST00000589904 676 ntBASIC24.45■■□□□ 1.5
COL3A1P02461 VPS72-207ENST00000640458 689 ntTSL 5 BASIC24.45■■□□□ 1.5
COL3A1P02461 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC24.45■■□□□ 1.5
COL3A1P02461 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
COL3A1P02461 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC24.44■■□□□ 1.5
COL3A1P02461 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL3A1P02461 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL3A1P02461 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL3A1P02461 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC24.44■■□□□ 1.5
COL3A1P02461 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
COL3A1P02461 PPOX-214ENST00000535223 664 ntTSL 3 BASIC24.44■■□□□ 1.5
COL3A1P02461 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC24.44■■□□□ 1.5
COL3A1P02461 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC24.44■■□□□ 1.5
COL3A1P02461 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
COL3A1P02461 AC092119.3-201ENST00000612618 583 ntBASIC24.44■■□□□ 1.5
COL3A1P02461 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL3A1P02461 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC24.44■■□□□ 1.5
COL3A1P02461 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
COL3A1P02461 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
COL3A1P02461 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 ASL-204ENST00000395331 1538 ntTSL 5 BASIC24.43■■□□□ 1.5
COL3A1P02461 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC24.43■■□□□ 1.5
COL3A1P02461 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC24.43■■□□□ 1.5
COL3A1P02461 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC24.43■■□□□ 1.5
COL3A1P02461 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC24.43■■□□□ 1.5
COL3A1P02461 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC24.43■■□□□ 1.5
COL3A1P02461 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC24.43■■□□□ 1.5
COL3A1P02461 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC24.43■■□□□ 1.5
COL3A1P02461 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
COL3A1P02461 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC24.43■■□□□ 1.5
COL3A1P02461 CIB2-208ENST00000560618 804 ntTSL 2 BASIC24.43■■□□□ 1.5
COL3A1P02461 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC24.43■■□□□ 1.5
COL3A1P02461 AL592071.1-201ENST00000611956 408 ntBASIC24.43■■□□□ 1.5
COL3A1P02461 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC24.42■■□□□ 1.5
COL3A1P02461 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL3A1P02461 BX276092.5-203ENST00000456199 560 ntBASIC24.42■■□□□ 1.5
COL3A1P02461 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC24.42■■□□□ 1.5
COL3A1P02461 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC24.42■■□□□ 1.5
COL3A1P02461 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC24.42■■□□□ 1.5
COL3A1P02461 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
COL3A1P02461 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC24.41■■□□□ 1.5
COL3A1P02461 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
COL3A1P02461 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC24.41■■□□□ 1.5
COL3A1P02461 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC24.41■■□□□ 1.5
COL3A1P02461 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC24.41■■□□□ 1.5
COL3A1P02461 AP002414.4-201ENST00000589764 1148 ntBASIC24.41■■□□□ 1.5
COL3A1P02461 AC012313.10-201ENST00000623509 926 ntBASIC24.41■■□□□ 1.5
COL3A1P02461 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC24.41■■□□□ 1.5
COL3A1P02461 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
COL3A1P02461 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
COL3A1P02461 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms