Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 LINC01126-201ENST00000623515 1646 ntBASIC23.29■■□□□ 1.32
CACNA1FO60840 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.29■■□□□ 1.32
CACNA1FO60840 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC23.29■■□□□ 1.32
CACNA1FO60840 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CACNA1FO60840 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC23.28■■□□□ 1.32
CACNA1FO60840 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CACNA1FO60840 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC23.28■■□□□ 1.32
CACNA1FO60840 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CACNA1FO60840 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC23.28■■□□□ 1.32
CACNA1FO60840 AC005336.2-201ENST00000593183 939 ntBASIC23.28■■□□□ 1.32
CACNA1FO60840 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.28■■□□□ 1.32
CACNA1FO60840 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CACNA1FO60840 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CACNA1FO60840 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
CACNA1FO60840 USP49-202ENST00000373010 2446 ntTSL 5 BASIC23.27■■□□□ 1.32
CACNA1FO60840 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 BX276092.5-203ENST00000456199 560 ntBASIC23.27■■□□□ 1.32
CACNA1FO60840 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC23.27■■□□□ 1.32
CACNA1FO60840 KRT8P26-201ENST00000534154 1276 ntBASIC23.27■■□□□ 1.32
CACNA1FO60840 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC23.27■■□□□ 1.32
CACNA1FO60840 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC23.27■■□□□ 1.32
CACNA1FO60840 AC004263.2-201ENST00000617183 678 ntBASIC23.27■■□□□ 1.32
CACNA1FO60840 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC23.27■■□□□ 1.32
CACNA1FO60840 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CACNA1FO60840 HCG4P8-203ENST00000443049 980 ntBASIC23.27■■□□□ 1.32
CACNA1FO60840 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC23.27■■□□□ 1.32
CACNA1FO60840 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.31
CACNA1FO60840 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC23.26■■□□□ 1.31
CACNA1FO60840 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC23.26■■□□□ 1.31
CACNA1FO60840 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
CACNA1FO60840 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 TSPY22P-201ENST00000427496 604 ntBASIC23.26■■□□□ 1.31
CACNA1FO60840 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC23.26■■□□□ 1.31
CACNA1FO60840 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CACNA1FO60840 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CACNA1FO60840 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CACNA1FO60840 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 EFTUD1P1-204ENST00000560401 1798 ntBASIC23.26■■□□□ 1.31
CACNA1FO60840 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CACNA1FO60840 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
CACNA1FO60840 ATP5G2P1-201ENST00000433580 426 ntBASIC23.25■■□□□ 1.31
CACNA1FO60840 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC23.25■■□□□ 1.31
CACNA1FO60840 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC23.25■■□□□ 1.31
CACNA1FO60840 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC23.25■■□□□ 1.31
CACNA1FO60840 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC23.25■■□□□ 1.31
CACNA1FO60840 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 AC016734.2-201ENST00000624325 1377 ntBASIC23.25■■□□□ 1.31
CACNA1FO60840 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC23.25■■□□□ 1.31
CACNA1FO60840 AC246785.2-201ENST00000432512 513 ntBASIC23.25■■□□□ 1.31
CACNA1FO60840 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CACNA1FO60840 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC23.25■■□□□ 1.31
CACNA1FO60840 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC23.25■■□□□ 1.31
CACNA1FO60840 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CACNA1FO60840 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.24■■□□□ 1.31
CACNA1FO60840 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1FO60840 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC23.24■■□□□ 1.31
CACNA1FO60840 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1FO60840 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC23.24■■□□□ 1.31
CACNA1FO60840 DRAXINP1-201ENST00000437611 948 ntBASIC23.24■■□□□ 1.31
CACNA1FO60840 NMU-205ENST00000511469 756 ntTSL 3 BASIC23.24■■□□□ 1.31
CACNA1FO60840 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1FO60840 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1FO60840 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1FO60840 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CACNA1FO60840 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms