Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LMX1BO60663 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
LMX1BO60663 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1BO60663 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1BO60663 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC16.32■□□□□ 0.2
LMX1BO60663 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LMX1BO60663 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LMX1BO60663 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC16.32■□□□□ 0.2
LMX1BO60663 LIN28AP1-201ENST00000429574 405 ntBASIC16.32■□□□□ 0.2
LMX1BO60663 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC16.32■□□□□ 0.2
LMX1BO60663 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1BO60663 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.32■□□□□ 0.2
LMX1BO60663 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC16.32■□□□□ 0.2
LMX1BO60663 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC16.32■□□□□ 0.2
LMX1BO60663 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC16.32■□□□□ 0.2
LMX1BO60663 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LMX1BO60663 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
LMX1BO60663 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
LMX1BO60663 CD276-203ENST00000537340 2439 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 KATNBL1P6-202ENST00000562413 1466 ntBASIC16.31■□□□□ 0.2
LMX1BO60663 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC16.31■□□□□ 0.2
LMX1BO60663 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
LMX1BO60663 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC16.31■□□□□ 0.2
LMX1BO60663 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC16.31■□□□□ 0.2
LMX1BO60663 CFL2-205ENST00000555765 632 ntTSL 2 BASIC16.31■□□□□ 0.2
LMX1BO60663 GRAMD4P8-201ENST00000605465 1115 ntBASIC16.31■□□□□ 0.2
LMX1BO60663 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 AC073592.3-201ENST00000625118 1834 ntBASIC16.31■□□□□ 0.2
LMX1BO60663 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LMX1BO60663 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LMX1BO60663 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
LMX1BO60663 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 PCDHB18P-201ENST00000524813 2368 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
LMX1BO60663 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1BO60663 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
LMX1BO60663 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1BO60663 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.3■□□□□ 0.2
LMX1BO60663 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC16.3■□□□□ 0.2
LMX1BO60663 ATP5G1P1-201ENST00000448724 379 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 DUX4L26-201ENST00000489078 1255 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LMX1BO60663 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LMX1BO60663 AC087388.1-201ENST00000571370 1112 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 NTF6B-201ENST00000591913 560 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 AC068587.9-201ENST00000641814 219 ntBASIC16.3■□□□□ 0.2
LMX1BO60663 AL031985.4-201ENST00000642138 673 ntBASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms