Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
UPK1AO00322 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
UPK1AO00322 HEIH-201ENST00000623091 1652 ntBASIC17.61■□□□□ 0.41
UPK1AO00322 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.61■□□□□ 0.41
UPK1AO00322 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.61■□□□□ 0.41
UPK1AO00322 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.61■□□□□ 0.41
UPK1AO00322 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 MFAP1P1-201ENST00000442257 1255 ntBASIC17.61■□□□□ 0.41
UPK1AO00322 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.61■□□□□ 0.41
UPK1AO00322 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC17.61■□□□□ 0.41
UPK1AO00322 AC068587.9-201ENST00000641814 219 ntBASIC17.61■□□□□ 0.41
UPK1AO00322 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.61■□□□□ 0.41
UPK1AO00322 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC17.61■□□□□ 0.41
UPK1AO00322 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
UPK1AO00322 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC17.61■□□□□ 0.41
UPK1AO00322 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
UPK1AO00322 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
UPK1AO00322 KRT8P32-201ENST00000512863 1461 ntBASIC17.61■□□□□ 0.41
UPK1AO00322 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.61■□□□□ 0.41
UPK1AO00322 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.61■□□□□ 0.41
UPK1AO00322 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
UPK1AO00322 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
UPK1AO00322 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC17.6■□□□□ 0.41
UPK1AO00322 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
UPK1AO00322 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
UPK1AO00322 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.6■□□□□ 0.41
UPK1AO00322 FDX2-206ENST00000492239 773 ntTSL 2 BASIC17.6■□□□□ 0.41
UPK1AO00322 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.6■□□□□ 0.41
UPK1AO00322 MIR4785-201ENST00000585005 73 ntBASIC17.6■□□□□ 0.41
UPK1AO00322 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.6■□□□□ 0.41
UPK1AO00322 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.6■□□□□ 0.41
UPK1AO00322 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.6■□□□□ 0.41
UPK1AO00322 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
UPK1AO00322 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
UPK1AO00322 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
UPK1AO00322 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
UPK1AO00322 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
UPK1AO00322 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.59■□□□□ 0.41
UPK1AO00322 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.59■□□□□ 0.41
UPK1AO00322 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.59■□□□□ 0.41
UPK1AO00322 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.59■□□□□ 0.41
UPK1AO00322 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC17.59■□□□□ 0.41
UPK1AO00322 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.59■□□□□ 0.41
UPK1AO00322 SNORA78-201ENST00000459373 127 ntBASIC17.59■□□□□ 0.41
UPK1AO00322 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.59■□□□□ 0.41
UPK1AO00322 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
UPK1AO00322 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.59■□□□□ 0.41
UPK1AO00322 LINC00896-202ENST00000609602 2128 ntBASIC17.59■□□□□ 0.41
UPK1AO00322 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
UPK1AO00322 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.59■□□□□ 0.41
UPK1AO00322 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.58■□□□□ 0.41
UPK1AO00322 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.58■□□□□ 0.41
UPK1AO00322 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
UPK1AO00322 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
UPK1AO00322 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms