Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM1O00151 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PDLIM1O00151 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.68■□□□□ 0.42
PDLIM1O00151 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM1O00151 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM1O00151 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
PDLIM1O00151 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM1O00151 AC103702.1-201ENST00000548801 2630 ntBASIC17.68■□□□□ 0.42
PDLIM1O00151 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.67■□□□□ 0.42
PDLIM1O00151 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM1O00151 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.67■□□□□ 0.42
PDLIM1O00151 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 ESRRAP1-201ENST00000400596 1257 ntBASIC17.67■□□□□ 0.42
PDLIM1O00151 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC17.67■□□□□ 0.42
PDLIM1O00151 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PDLIM1O00151 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC17.67■□□□□ 0.42
PDLIM1O00151 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.67■□□□□ 0.42
PDLIM1O00151 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PDLIM1O00151 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 KLF2-202ENST00000592003 564 ntTSL 3 BASIC17.67■□□□□ 0.42
PDLIM1O00151 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 AL118508.1-201ENST00000613502 2345 ntBASIC17.67■□□□□ 0.42
PDLIM1O00151 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM1O00151 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM1O00151 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PDLIM1O00151 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM1O00151 AL162741.1-201ENST00000565563 1558 ntBASIC17.66■□□□□ 0.42
PDLIM1O00151 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM1O00151 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.66■□□□□ 0.42
PDLIM1O00151 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM1O00151 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM1O00151 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PDLIM1O00151 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
PDLIM1O00151 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 SOX15-203ENST00000570788 1093 ntBASIC17.66■□□□□ 0.42
PDLIM1O00151 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM1O00151 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PDLIM1O00151 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.66■□□□□ 0.42
PDLIM1O00151 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PDLIM1O00151 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM1O00151 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PDLIM1O00151 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
PDLIM1O00151 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC17.65■□□□□ 0.42
PDLIM1O00151 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PDLIM1O00151 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.65■□□□□ 0.42
PDLIM1O00151 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
PDLIM1O00151 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM1O00151 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM1O00151 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.65■□□□□ 0.42
PDLIM1O00151 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.65■□□□□ 0.42
PDLIM1O00151 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.65■□□□□ 0.42
PDLIM1O00151 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM1O00151 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM1O00151 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms