Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 AC004980.1-204ENST00000429707 299 ntBASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 RCC2P3-201ENST00000418112 1537 ntBASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 ANXA3-201ENST00000264908 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 AC008556.1-201ENST00000610908 2040 ntBASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 AC134043.2-201ENST00000624206 2238 ntBASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 AC026366.1-201ENST00000488803 879 ntBASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 RNA5SP413-201ENST00000516373 109 ntBASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
TRIM49D1C9J1S8 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 AC138028.4-201ENST00000564984 1845 ntBASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 AC020916.1-201ENST00000587762 1774 ntBASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 AL355802.2-201ENST00000402069 882 ntBASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 AC091390.4-202ENST00000476426 537 ntBASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.6■□□□□ 0.57
TRIM49D1C9J1S8 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM49D1C9J1S8 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM49D1C9J1S8 REXO1L9P-201ENST00000604264 2108 ntBASIC18.59■□□□□ 0.57
TRIM49D1C9J1S8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
TRIM49D1C9J1S8 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
TRIM49D1C9J1S8 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms