Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS9D1Q9Y2B5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 MYLKP1-201ENST00000509077 1580 ntBASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 GLDC-219ENST00000640208 420 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 KRT8P7-201ENST00000533003 1432 ntBASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC18.48■□□□□ 0.55
VPS9D1Q9Y2B5 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 RN7SL602P-201ENST00000578326 324 ntBASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 AL499627.1-201ENST00000569373 2188 ntBASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS9D1Q9Y2B5 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 MIR1238-201ENST00000408483 83 ntBASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 AC010653.2-201ENST00000623505 997 ntBASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS9D1Q9Y2B5 AC104581.1-202ENST00000635932 2618 ntBASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms