Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 FP475955.4-201ENST00000623131 1990 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 CYP51A1P1-201ENST00000492267 1507 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 IGHGP-201ENST00000390555 1178 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 AL160237.2-201ENST00000556165 472 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 AC104692.2-201ENST00000603054 253 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 AC124864.1-201ENST00000623408 392 ntBASIC18.61■□□□□ 0.57
HMGB4Q8WW32 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.61■□□□□ 0.57
HMGB4Q8WW32 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 GUSBP12-201ENST00000513727 720 ntBASIC18.6■□□□□ 0.57
HMGB4Q8WW32 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 TPM1-218ENST00000559281 851 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 TEN1-204ENST00000588202 862 ntTSL 3 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 AC024563.2-201ENST00000603282 481 ntBASIC18.6■□□□□ 0.57
HMGB4Q8WW32 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 AL592071.1-201ENST00000611956 408 ntBASIC18.6■□□□□ 0.57
HMGB4Q8WW32 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC18.6■□□□□ 0.57
HMGB4Q8WW32 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 DFFB-203ENST00000341385 572 ntTSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC18.59■□□□□ 0.57
HMGB4Q8WW32 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
HMGB4Q8WW32 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms