Protein–RNA interactions for Protein: Q8NB14

USP38, Ubiquitin carboxyl-terminal hydrolase 38, humanhuman

Predictions only

Length 1,042 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP38Q8NB14 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
USP38Q8NB14 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
USP38Q8NB14 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USP38Q8NB14 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC20.71■□□□□ 0.91
USP38Q8NB14 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 GPAT2P1-201ENST00000444924 1672 ntBASIC20.71■□□□□ 0.91
USP38Q8NB14 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC20.71■□□□□ 0.91
USP38Q8NB14 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.71■□□□□ 0.91
USP38Q8NB14 AC079781.3-201ENST00000449110 356 ntBASIC20.71■□□□□ 0.91
USP38Q8NB14 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.71■□□□□ 0.91
USP38Q8NB14 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
USP38Q8NB14 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC20.71■□□□□ 0.91
USP38Q8NB14 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC20.71■□□□□ 0.91
USP38Q8NB14 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
USP38Q8NB14 KRT8P3-201ENST00000519669 1449 ntBASIC20.7■□□□□ 0.9
USP38Q8NB14 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.7■□□□□ 0.9
USP38Q8NB14 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
USP38Q8NB14 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 AL023284.2-201ENST00000405850 579 ntBASIC20.7■□□□□ 0.9
USP38Q8NB14 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC20.7■□□□□ 0.9
USP38Q8NB14 RASA4DP-201ENST00000460726 1199 ntBASIC20.7■□□□□ 0.9
USP38Q8NB14 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC20.7■□□□□ 0.9
USP38Q8NB14 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.7■□□□□ 0.9
USP38Q8NB14 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC20.7■□□□□ 0.9
USP38Q8NB14 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC20.7■□□□□ 0.9
USP38Q8NB14 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
USP38Q8NB14 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC20.7■□□□□ 0.9
USP38Q8NB14 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
USP38Q8NB14 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC20.7■□□□□ 0.9
USP38Q8NB14 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC20.69■□□□□ 0.9
USP38Q8NB14 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
USP38Q8NB14 GOLGA6L5P-202ENST00000515341 1828 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USP38Q8NB14 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC20.69■□□□□ 0.9
USP38Q8NB14 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
USP38Q8NB14 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 HBZP1-201ENST00000354915 429 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.69■□□□□ 0.9
USP38Q8NB14 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.69■□□□□ 0.9
USP38Q8NB14 AC079776.4-201ENST00000511039 504 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC20.69■□□□□ 0.9
USP38Q8NB14 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 AL160237.2-201ENST00000556165 472 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 MIR3180-1-201ENST00000580374 94 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 MIR3180-5-201ENST00000583743 153 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 MIR3180-3-201ENST00000584616 94 ntBASIC20.69■□□□□ 0.9
USP38Q8NB14 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC20.69■□□□□ 0.9
USP38Q8NB14 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
USP38Q8NB14 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC20.69■□□□□ 0.9
USP38Q8NB14 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
USP38Q8NB14 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
USP38Q8NB14 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms