Protein–RNA interactions for Protein: Q86VH4

LRRTM4, Leucine-rich repeat transmembrane neuronal protein 4, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRTM4Q86VH4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 MIR3180-4-201ENST00000582223 153 ntBASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
LRRTM4Q86VH4 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AC093525.10-201ENST00000625130 1569 ntBASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AC112777.1-201ENST00000540175 1423 ntBASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.22■□□□□ 0.51
LRRTM4Q86VH4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 AL031133.1-201ENST00000406807 723 ntBASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 AP000974.1-201ENST00000623909 2387 ntBASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 EDC3-214ENST00000568176 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
LRRTM4Q86VH4 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
LRRTM4Q86VH4 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 BX323043.1-201ENST00000641006 1765 ntBASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 LINC01311-201ENST00000565162 1445 ntBASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 ANO7L1-203ENST00000602586 1720 ntBASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
LRRTM4Q86VH4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 AC018445.3-201ENST00000624177 1945 ntBASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
LRRTM4Q86VH4 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms