Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC20.47■□□□□ 0.87
CCDC40Q4G0X9 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 FDX2-206ENST00000492239 773 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 Z99916.2-201ENST00000604037 246 ntBASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 AC026471.5-201ENST00000615068 467 ntBASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 REXO1L10P-201ENST00000615707 1290 ntBASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 AC008622.2-201ENST00000617006 1229 ntBASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 REXO1L12P-201ENST00000622156 912 ntBASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.46■□□□□ 0.87
CCDC40Q4G0X9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.87
CCDC40Q4G0X9 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.45■□□□□ 0.87
CCDC40Q4G0X9 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.45■□□□□ 0.87
CCDC40Q4G0X9 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC20.45■□□□□ 0.87
CCDC40Q4G0X9 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 ENSA-205ENST00000361532 792 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CCDC40Q4G0X9 AC112777.1-201ENST00000540175 1423 ntBASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 AL390961.4-201ENST00000623958 2535 ntBASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.44■□□□□ 0.86
CCDC40Q4G0X9 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms