Protein–RNA interactions for Protein: Q496Y0

LONRF3, LON peptidase N-terminal domain and RING finger protein 3, humanhuman

Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LONRF3Q496Y0 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LONRF3Q496Y0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.15■□□□□ 0.98
LONRF3Q496Y0 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LONRF3Q496Y0 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
LONRF3Q496Y0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 AL445228.2-201ENST00000605589 952 ntBASIC21.14■□□□□ 0.97
LONRF3Q496Y0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LONRF3Q496Y0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AL357033.4-201ENST00000617703 1807 ntBASIC21.13■□□□□ 0.97
LONRF3Q496Y0 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AC113347.1-201ENST00000413321 391 ntBASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AL137013.1-201ENST00000432946 1228 ntBASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 CKBP1-201ENST00000565489 1086 ntBASIC21.13■□□□□ 0.97
LONRF3Q496Y0 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 AC092865.7-201ENST00000641832 219 ntBASIC21.13■□□□□ 0.97
LONRF3Q496Y0 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.13■□□□□ 0.97
LONRF3Q496Y0 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 AL133373.2-201ENST00000623187 2828 ntBASIC21.12■□□□□ 0.97
LONRF3Q496Y0 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 TERF1P1-201ENST00000311003 1181 ntBASIC21.12■□□□□ 0.97
LONRF3Q496Y0 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 SLC25A3P1-201ENST00000443844 931 ntBASIC21.12■□□□□ 0.97
LONRF3Q496Y0 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 AC010203.1-204ENST00000548782 407 ntBASIC21.12■□□□□ 0.97
LONRF3Q496Y0 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LONRF3Q496Y0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 AL049597.2-201ENST00000565575 961 ntBASIC21.11■□□□□ 0.97
LONRF3Q496Y0 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LONRF3Q496Y0 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms