Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 NEFHP1-201ENST00000412845 2629 ntBASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 ARMC10P1-201ENST00000313754 855 ntBASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 SLC25A1P2-201ENST00000430693 912 ntBASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AL590326.2-201ENST00000625139 305 ntBASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AC126763.1-201ENST00000552015 2118 ntBASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 AC090164.3-201ENST00000610780 2143 ntBASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD3Q3KNS1 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ENSA-205ENST00000361532 792 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 HMGA1P5-201ENST00000412453 271 ntBASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 AC007663.1-201ENST00000438948 1240 ntBASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD3Q3KNS1 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PTCHD3Q3KNS1 GAS7-205ENST00000542249 1799 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
PTCHD3Q3KNS1 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PTCHD3Q3KNS1 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PTCHD3Q3KNS1 LGALS8-AS1-201ENST00000487567 1457 ntBASIC18.14■□□□□ 0.5
PTCHD3Q3KNS1 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.14■□□□□ 0.5
PTCHD3Q3KNS1 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 MCCD1P1-208ENST00000445732 328 ntBASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 DUX4L26-201ENST00000489078 1255 ntBASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 AL023803.3-201ENST00000615559 522 ntBASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 AC006011.2-201ENST00000621313 1158 ntBASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD3Q3KNS1 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms