Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SUMO3P55854 COX11P1-201ENST00000489116 835 ntBASIC16.82■□□□□ 0.28
SUMO3P55854 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SUMO3P55854 AC010240.3-201ENST00000607688 395 ntBASIC16.82■□□□□ 0.28
SUMO3P55854 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SUMO3P55854 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SUMO3P55854 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SUMO3P55854 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC16.82■□□□□ 0.28
SUMO3P55854 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.81■□□□□ 0.28
SUMO3P55854 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SUMO3P55854 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 AC005521.1-201ENST00000393351 872 ntBASIC16.81■□□□□ 0.28
SUMO3P55854 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC16.81■□□□□ 0.28
SUMO3P55854 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 AC034232.1-201ENST00000506026 1064 ntBASIC16.81■□□□□ 0.28
SUMO3P55854 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SUMO3P55854 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 AC126763.1-201ENST00000552015 2118 ntBASIC16.81■□□□□ 0.28
SUMO3P55854 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SUMO3P55854 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 AC009102.3-201ENST00000623118 1491 ntBASIC16.8■□□□□ 0.28
SUMO3P55854 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SUMO3P55854 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.8■□□□□ 0.28
SUMO3P55854 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.8■□□□□ 0.28
SUMO3P55854 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC16.8■□□□□ 0.28
SUMO3P55854 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.8■□□□□ 0.28
SUMO3P55854 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.8■□□□□ 0.28
SUMO3P55854 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.8■□□□□ 0.28
SUMO3P55854 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.8■□□□□ 0.28
SUMO3P55854 AC140113.3-201ENST00000605663 199 ntBASIC16.8■□□□□ 0.28
SUMO3P55854 AC024243.1-201ENST00000609234 778 ntBASIC16.8■□□□□ 0.28
SUMO3P55854 AC090164.3-201ENST00000610780 2143 ntBASIC16.8■□□□□ 0.28
SUMO3P55854 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.8■□□□□ 0.28
SUMO3P55854 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC16.8■□□□□ 0.28
SUMO3P55854 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SUMO3P55854 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC16.79■□□□□ 0.28
SUMO3P55854 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.79■□□□□ 0.28
SUMO3P55854 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.79■□□□□ 0.28
SUMO3P55854 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
SUMO3P55854 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SUMO3P55854 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.79■□□□□ 0.28
SUMO3P55854 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC16.79■□□□□ 0.28
SUMO3P55854 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.79■□□□□ 0.28
SUMO3P55854 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms