Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC21.44■■□□□ 1.02
HMGCS2P54868 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 CCNC-219ENST00000627680 896 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 VPS51-217ENST00000639871 243 ntTSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC21.44■■□□□ 1.02
HMGCS2P54868 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
HMGCS2P54868 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.44■■□□□ 1.02
HMGCS2P54868 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.44■■□□□ 1.02
HMGCS2P54868 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
HMGCS2P54868 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
HMGCS2P54868 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
HMGCS2P54868 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC21.43■■□□□ 1.02
HMGCS2P54868 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 TSPY12P-201ENST00000421279 868 ntBASIC21.43■■□□□ 1.02
HMGCS2P54868 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC21.43■■□□□ 1.02
HMGCS2P54868 CDV3-207ENST00000508481 661 ntTSL 3 BASIC21.43■■□□□ 1.02
HMGCS2P54868 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
HMGCS2P54868 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC21.43■■□□□ 1.02
HMGCS2P54868 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC21.43■■□□□ 1.02
HMGCS2P54868 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
HMGCS2P54868 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
HMGCS2P54868 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
HMGCS2P54868 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.43■■□□□ 1.02
HMGCS2P54868 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
HMGCS2P54868 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
HMGCS2P54868 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
HMGCS2P54868 LSM5-204ENST00000409909 740 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGCS2P54868 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGCS2P54868 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 SAPCD2P3-201ENST00000455031 850 ntBASIC21.42■■□□□ 1.02
HMGCS2P54868 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGCS2P54868 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGCS2P54868 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC21.42■■□□□ 1.02
HMGCS2P54868 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC21.42■■□□□ 1.02
HMGCS2P54868 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 REXO1L6P-202ENST00000619970 1078 ntBASIC21.42■■□□□ 1.02
HMGCS2P54868 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
HMGCS2P54868 AL032819.2-201ENST00000624543 2162 ntBASIC21.42■■□□□ 1.02
HMGCS2P54868 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
HMGCS2P54868 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
HMGCS2P54868 MTMR9LP-203ENST00000426597 1545 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 HLA-A-201ENST00000376802 1334 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
HMGCS2P54868 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGCS2P54868 MINOS1P3-201ENST00000457048 203 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 AF238378.1-201ENST00000526806 358 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGCS2P54868 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGCS2P54868 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC21.41■■□□□ 1.02
HMGCS2P54868 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC21.41■■□□□ 1.02
HMGCS2P54868 AC011840.4-201ENST00000578471 627 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC21.41■■□□□ 1.02
HMGCS2P54868 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGCS2P54868 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 IGHV3OR16-7-201ENST00000604106 360 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
HMGCS2P54868 AC004263.2-201ENST00000617183 678 ntBASIC21.41■■□□□ 1.02
HMGCS2P54868 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HMGCS2P54868 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
HMGCS2P54868 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
HMGCS2P54868 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
HMGCS2P54868 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGCS2P54868 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
HMGCS2P54868 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
HMGCS2P54868 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
HMGCS2P54868 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGCS2P54868 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC21.4■■□□□ 1.02
HMGCS2P54868 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms