Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LIG3P49916 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIG3P49916 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIG3P49916 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.51■□□□□ 0.71
LIG3P49916 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC19.51■□□□□ 0.71
LIG3P49916 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
LIG3P49916 AC006333.2-201ENST00000607957 2099 ntBASIC19.5■□□□□ 0.71
LIG3P49916 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIG3P49916 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC19.5■□□□□ 0.71
LIG3P49916 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC19.5■□□□□ 0.71
LIG3P49916 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIG3P49916 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
LIG3P49916 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
LIG3P49916 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIG3P49916 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.5■□□□□ 0.71
LIG3P49916 KRT8P8-201ENST00000434750 1448 ntBASIC19.5■□□□□ 0.71
LIG3P49916 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 AC008894.3-201ENST00000624324 3103 ntBASIC19.49■□□□□ 0.71
LIG3P49916 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LIG3P49916 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.49■□□□□ 0.71
LIG3P49916 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 TSPY15P-201ENST00000457163 923 ntBASIC19.49■□□□□ 0.71
LIG3P49916 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 NUDT16P1-203ENST00000513809 620 ntBASIC19.49■□□□□ 0.71
LIG3P49916 AL355075.4-201ENST00000554988 638 ntBASIC19.49■□□□□ 0.71
LIG3P49916 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.49■□□□□ 0.71
LIG3P49916 AL445675.2-201ENST00000620291 557 ntBASIC19.49■□□□□ 0.71
LIG3P49916 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.49■□□□□ 0.71
LIG3P49916 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 PCDHA12-202ENST00000613593 2588 ntBASIC19.49■□□□□ 0.71
LIG3P49916 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIG3P49916 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.49■□□□□ 0.71
LIG3P49916 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC19.49■□□□□ 0.71
LIG3P49916 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIG3P49916 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIG3P49916 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.49■□□□□ 0.71
LIG3P49916 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
LIG3P49916 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
LIG3P49916 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
LIG3P49916 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC19.48■□□□□ 0.71
LIG3P49916 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC19.48■□□□□ 0.71
LIG3P49916 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.48■□□□□ 0.71
LIG3P49916 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.48■□□□□ 0.71
LIG3P49916 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC19.48■□□□□ 0.71
LIG3P49916 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC19.48■□□□□ 0.71
LIG3P49916 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC19.48■□□□□ 0.71
LIG3P49916 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.48■□□□□ 0.71
LIG3P49916 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
LIG3P49916 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
LIG3P49916 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
LIG3P49916 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIG3P49916 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
LIG3P49916 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC19.47■□□□□ 0.71
LIG3P49916 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
LIG3P49916 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIG3P49916 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC19.47■□□□□ 0.71
LIG3P49916 GXYLT1P3-201ENST00000453058 1193 ntBASIC19.47■□□□□ 0.71
LIG3P49916 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.47■□□□□ 0.71
LIG3P49916 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms