Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.64■□□□□ 0.41
RORAP35398 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.64■□□□□ 0.41
RORAP35398 KRT18P56-201ENST00000507275 550 ntBASIC17.64■□□□□ 0.41
RORAP35398 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.64■□□□□ 0.41
RORAP35398 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
RORAP35398 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
RORAP35398 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.64■□□□□ 0.41
RORAP35398 AC079602.3-201ENST00000623931 403 ntBASIC17.64■□□□□ 0.41
RORAP35398 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.64■□□□□ 0.41
RORAP35398 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
RORAP35398 AC138932.1-201ENST00000534164 6830 ntBASIC17.64■□□□□ 0.41
RORAP35398 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.64■□□□□ 0.41
RORAP35398 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
RORAP35398 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
RORAP35398 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.63■□□□□ 0.41
RORAP35398 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.63■□□□□ 0.41
RORAP35398 KRT18P23-201ENST00000435622 1283 ntBASIC17.63■□□□□ 0.41
RORAP35398 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.63■□□□□ 0.41
RORAP35398 ELP6-205ENST00000439305 880 ntTSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
RORAP35398 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC17.63■□□□□ 0.41
RORAP35398 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.63■□□□□ 0.41
RORAP35398 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC17.63■□□□□ 0.41
RORAP35398 NDUFV2-AS1-203ENST00000608008 779 ntBASIC17.63■□□□□ 0.41
RORAP35398 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC17.63■□□□□ 0.41
RORAP35398 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
RORAP35398 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.62■□□□□ 0.41
RORAP35398 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 AL161938.1-201ENST00000569833 2180 ntBASIC17.62■□□□□ 0.41
RORAP35398 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
RORAP35398 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.62■□□□□ 0.41
RORAP35398 HLA-F-220ENST00000434407 884 ntBASIC17.62■□□□□ 0.41
RORAP35398 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC17.62■□□□□ 0.41
RORAP35398 AC104390.1-201ENST00000555663 520 ntBASIC17.62■□□□□ 0.41
RORAP35398 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
RORAP35398 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
RORAP35398 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC17.62■□□□□ 0.41
RORAP35398 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
RORAP35398 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.62■□□□□ 0.41
RORAP35398 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
RORAP35398 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC17.61■□□□□ 0.41
RORAP35398 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.61■□□□□ 0.41
RORAP35398 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.61■□□□□ 0.41
RORAP35398 AC068587.9-201ENST00000641814 219 ntBASIC17.61■□□□□ 0.41
RORAP35398 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.61■□□□□ 0.41
RORAP35398 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
RORAP35398 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms