Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MSX1P28360 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 AP000523.1-201ENST00000398242 1049 ntBASIC17.01■□□□□ 0.31
MSX1P28360 KRT18P41-201ENST00000518924 1277 ntBASIC17.01■□□□□ 0.31
MSX1P28360 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
MSX1P28360 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC17.01■□□□□ 0.31
MSX1P28360 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
MSX1P28360 AC141257.4-201ENST00000634557 245 ntBASIC17.01■□□□□ 0.31
MSX1P28360 AC136944.6-201ENST00000634818 245 ntBASIC17.01■□□□□ 0.31
MSX1P28360 AP000550.4-202ENST00000639755 178 ntBASIC17.01■□□□□ 0.31
MSX1P28360 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC17.01■□□□□ 0.31
MSX1P28360 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC17.01■□□□□ 0.31
MSX1P28360 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.01■□□□□ 0.31
MSX1P28360 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 TNXA-203ENST00000507684 2038 ntBASIC17.01■□□□□ 0.31
MSX1P28360 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.01■□□□□ 0.31
MSX1P28360 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
MSX1P28360 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17■□□□□ 0.31
MSX1P28360 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 AL031598.1-201ENST00000561511 1773 ntBASIC17■□□□□ 0.31
MSX1P28360 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
MSX1P28360 CROCCP3-202ENST00000420820 1947 ntBASIC17■□□□□ 0.31
MSX1P28360 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSX1P28360 ILF2-202ENST00000368681 726 ntTSL 2 BASIC17■□□□□ 0.31
MSX1P28360 KRT8P45-201ENST00000414328 1447 ntBASIC17■□□□□ 0.31
MSX1P28360 CD70-202ENST00000423145 881 ntTSL 2 BASIC17■□□□□ 0.31
MSX1P28360 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17■□□□□ 0.31
MSX1P28360 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17■□□□□ 0.31
MSX1P28360 AC112777.1-201ENST00000540175 1423 ntBASIC17■□□□□ 0.31
MSX1P28360 NEK4P2-201ENST00000580004 1012 ntBASIC17■□□□□ 0.31
MSX1P28360 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC17■□□□□ 0.31
MSX1P28360 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC17■□□□□ 0.31
MSX1P28360 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17■□□□□ 0.31
MSX1P28360 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17■□□□□ 0.31
MSX1P28360 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC17■□□□□ 0.31
MSX1P28360 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
MSX1P28360 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17■□□□□ 0.31
MSX1P28360 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
MSX1P28360 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
MSX1P28360 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 AC098818.2-201ENST00000564925 2320 ntBASIC16.99■□□□□ 0.31
MSX1P28360 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
MSX1P28360 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 AC036111.1-201ENST00000533973 1582 ntBASIC16.99■□□□□ 0.31
MSX1P28360 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.99■□□□□ 0.31
MSX1P28360 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
MSX1P28360 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX1P28360 AP000593.1-201ENST00000393668 712 ntBASIC16.99■□□□□ 0.31
MSX1P28360 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 ELP6-205ENST00000439305 880 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX1P28360 AC009947.2-201ENST00000444014 672 ntBASIC16.99■□□□□ 0.31
MSX1P28360 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC16.99■□□□□ 0.31
MSX1P28360 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC16.99■□□□□ 0.31
MSX1P28360 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX1P28360 AL121956.5-201ENST00000625261 221 ntBASIC16.99■□□□□ 0.31
MSX1P28360 AL031432.5-201ENST00000641059 760 ntBASIC16.99■□□□□ 0.31
MSX1P28360 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
MSX1P28360 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC16.99■□□□□ 0.31
MSX1P28360 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
MSX1P28360 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.99■□□□□ 0.31
MSX1P28360 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.99■□□□□ 0.31
MSX1P28360 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
MSX1P28360 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
MSX1P28360 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
MSX1P28360 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX1P28360 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC16.98■□□□□ 0.31
MSX1P28360 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
MSX1P28360 SNAI3-AS1-205ENST00000568633 2096 ntBASIC16.98■□□□□ 0.31
MSX1P28360 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX1P28360 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX1P28360 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
MSX1P28360 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
MSX1P28360 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC16.98■□□□□ 0.31
MSX1P28360 HOXB1-202ENST00000577092 1414 ntBASIC16.98■□□□□ 0.31
MSX1P28360 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms