Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 MYLKP1-201ENST00000509077 1580 ntBASIC17.92■□□□□ 0.46
SLC28A1O00337 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
SLC28A1O00337 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
SLC28A1O00337 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
SLC28A1O00337 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC28A1O00337 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC28A1O00337 KRT18P41-201ENST00000518924 1277 ntBASIC17.92■□□□□ 0.46
SLC28A1O00337 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.92■□□□□ 0.46
SLC28A1O00337 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.46
SLC28A1O00337 AL359736.2-201ENST00000621992 437 ntBASIC17.92■□□□□ 0.46
SLC28A1O00337 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC17.92■□□□□ 0.46
SLC28A1O00337 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC28A1O00337 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC17.92■□□□□ 0.46
SLC28A1O00337 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
SLC28A1O00337 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SLC28A1O00337 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
SLC28A1O00337 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 HTR7P1-202ENST00000624664 4411 ntBASIC17.91■□□□□ 0.46
SLC28A1O00337 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
SLC28A1O00337 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC28A1O00337 AL135905.2-201ENST00000584934 1404 ntBASIC17.91■□□□□ 0.46
SLC28A1O00337 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
SLC28A1O00337 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC28A1O00337 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
SLC28A1O00337 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC28A1O00337 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC28A1O00337 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.91■□□□□ 0.46
SLC28A1O00337 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC28A1O00337 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
SLC28A1O00337 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.91■□□□□ 0.46
SLC28A1O00337 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.91■□□□□ 0.46
SLC28A1O00337 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
SLC28A1O00337 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.9■□□□□ 0.46
SLC28A1O00337 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.9■□□□□ 0.46
SLC28A1O00337 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SLC28A1O00337 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.9■□□□□ 0.46
SLC28A1O00337 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC28A1O00337 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.9■□□□□ 0.46
SLC28A1O00337 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC28A1O00337 FAM197Y1-201ENST00000421178 764 ntBASIC17.9■□□□□ 0.46
SLC28A1O00337 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SLC28A1O00337 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC17.9■□□□□ 0.46
SLC28A1O00337 FAM201B-201ENST00000458407 597 ntBASIC17.9■□□□□ 0.46
SLC28A1O00337 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC17.9■□□□□ 0.46
SLC28A1O00337 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC28A1O00337 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC28A1O00337 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.9■□□□□ 0.46
SLC28A1O00337 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC17.9■□□□□ 0.46
SLC28A1O00337 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SLC28A1O00337 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SLC28A1O00337 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
SLC28A1O00337 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
SLC28A1O00337 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.46
SLC28A1O00337 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A1O00337 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
SLC28A1O00337 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A1O00337 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A1O00337 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SLC28A1O00337 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A1O00337 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A1O00337 MESTP1-201ENST00000404287 994 ntBASIC17.89■□□□□ 0.45
SLC28A1O00337 SAPCD2P4-201ENST00000424595 1171 ntBASIC17.89■□□□□ 0.45
SLC28A1O00337 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A1O00337 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SLC28A1O00337 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A1O00337 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.89■□□□□ 0.45
SLC28A1O00337 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms