Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 KRT16P5-201ENST00000455284 522 ntBASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 AL445675.2-201ENST00000620291 557 ntBASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.65■□□□□ 0.58
TRIM49D1C9J1S8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.64■□□□□ 0.58
TRIM49D1C9J1S8 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM49D1C9J1S8 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.64■□□□□ 0.58
TRIM49D1C9J1S8 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM49D1C9J1S8 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
TRIM49D1C9J1S8 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
TRIM49D1C9J1S8 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 AC239809.2-201ENST00000415381 517 ntBASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 AC131212.4-201ENST00000623606 975 ntBASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.63■□□□□ 0.57
TRIM49D1C9J1S8 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
TRIM49D1C9J1S8 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms