Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 AC008040.2-201ENST00000461049 708 ntBASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 RNF121-214ENST00000533380 870 ntTSL 3 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 AF186192.3-201ENST00000583427 947 ntBASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 FAM197Y4-202ENST00000622692 608 ntBASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 AL357033.4-201ENST00000617703 1807 ntBASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CPSF4LA6NMK7 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 ABALON-201ENST00000629058 1903 ntBASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 FAM207BP-201ENST00000447172 505 ntBASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 CD276-201ENST00000318424 2738 ntTSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CPSF4LA6NMK7 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 RCC2P3-201ENST00000418112 1537 ntBASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 NOC2LP1-202ENST00000452600 2235 ntBASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 CKBP1-201ENST00000565489 1086 ntBASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 AC026271.3-201ENST00000571884 352 ntBASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 AC073195.1-201ENST00000607241 877 ntBASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CPSF4LA6NMK7 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
CPSF4LA6NMK7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC17.15■□□□□ 0.34
CPSF4LA6NMK7 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms