Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 KRT8P7-201ENST00000533003 1432 ntBASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 AC006333.2-201ENST00000607957 2099 ntBASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
TRIM39Q9HCM9 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 AL441883.1-201ENST00000566170 1045 ntBASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 AC034236.2-201ENST00000606662 1610 ntBASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 AL357033.4-201ENST00000617703 1807 ntBASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 MTMR9LP-203ENST00000426597 1545 ntBASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
TRIM39Q9HCM9 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 AC063952.2-201ENST00000498792 1227 ntBASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 AC010331.1-201ENST00000611423 582 ntBASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 AC112497.1-201ENST00000624824 639 ntBASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 AL590326.2-201ENST00000625139 305 ntBASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.43■□□□□ 0.54
TRIM39Q9HCM9 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 HOXB1-202ENST00000577092 1414 ntBASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 GCSHP2-201ENST00000560971 527 ntBASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
TRIM39Q9HCM9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 74.7 ms