Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 HCG11-201ENST00000411553 5696 ntBASIC18.47■□□□□ 0.55
VPS35Q96QK1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 AC006011.2-201ENST00000621313 1158 ntBASIC18.47■□□□□ 0.55
VPS35Q96QK1 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS35Q96QK1 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS35Q96QK1 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 BTG3-201ENST00000339775 1485 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 ANKRD20A18P-201ENST00000359341 492 ntBASIC18.46■□□□□ 0.55
VPS35Q96QK1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 AC117947.1-201ENST00000427448 529 ntBASIC18.46■□□□□ 0.55
VPS35Q96QK1 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.46■□□□□ 0.55
VPS35Q96QK1 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 AC112497.1-201ENST00000624824 639 ntBASIC18.46■□□□□ 0.55
VPS35Q96QK1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS35Q96QK1 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS35Q96QK1 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 CROCCP3-202ENST00000420820 1947 ntBASIC18.45■□□□□ 0.54
VPS35Q96QK1 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 YBX1P2-201ENST00000489612 999 ntBASIC18.45■□□□□ 0.54
VPS35Q96QK1 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 AC139887.4-201ENST00000607877 719 ntBASIC18.45■□□□□ 0.54
VPS35Q96QK1 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.45■□□□□ 0.54
VPS35Q96QK1 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 AL031598.1-201ENST00000561511 1773 ntBASIC18.45■□□□□ 0.54
VPS35Q96QK1 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS35Q96QK1 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS35Q96QK1 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 LETM1P2-201ENST00000597330 2178 ntBASIC18.44■□□□□ 0.54
VPS35Q96QK1 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS35Q96QK1 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 57.9 ms