Protein–RNA interactions for Protein: Q96DD0

LRRC39, Leucine-rich repeat-containing protein 39, humanhuman

Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC39Q96DD0 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 MIR6786-201ENST00000616843 113 ntBASIC18.82■□□□□ 0.6
LRRC39Q96DD0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LRRC39Q96DD0 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 B3GAT3P1-201ENST00000471720 806 ntBASIC18.81■□□□□ 0.6
LRRC39Q96DD0 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 C1QBPP2-201ENST00000528754 825 ntBASIC18.81■□□□□ 0.6
LRRC39Q96DD0 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 FSCN1P1-201ENST00000568912 1481 ntBASIC18.81■□□□□ 0.6
LRRC39Q96DD0 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LRRC39Q96DD0 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 AC011506.1-201ENST00000474329 610 ntBASIC18.8■□□□□ 0.6
LRRC39Q96DD0 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 RNF121-214ENST00000533380 870 ntTSL 3 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 AP000692.2-201ENST00000608391 879 ntBASIC18.8■□□□□ 0.6
LRRC39Q96DD0 AC005332.8-201ENST00000622750 2735 ntBASIC18.8■□□□□ 0.6
LRRC39Q96DD0 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LRRC39Q96DD0 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 ARSA-201ENST00000216124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 RPPH1-201ENST00000516869 333 ntBASIC18.79■□□□□ 0.6
LRRC39Q96DD0 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 PCDHB18P-201ENST00000524813 2368 ntBASIC18.79■□□□□ 0.6
LRRC39Q96DD0 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
LRRC39Q96DD0 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.78■□□□□ 0.6
LRRC39Q96DD0 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 MIR564-202ENST00000385049 94 ntBASIC18.78■□□□□ 0.6
LRRC39Q96DD0 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
LRRC39Q96DD0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms