Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
DEPDC4Q8N2C3 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 AL139384.1-201ENST00000612143 3047 ntBASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 GOLGA6L3-201ENST00000507199 1679 ntBASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DEPDC4Q8N2C3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 MTDHP1-201ENST00000605323 784 ntBASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
DEPDC4Q8N2C3 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 AC008550.1-201ENST00000511500 884 ntBASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 AC233263.1-201ENST00000578059 224 ntBASIC17.3■□□□□ 0.36
DEPDC4Q8N2C3 USP36-216ENST00000589424 970 ntTSL 5 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms