Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 KRT8P41-201ENST00000533985 1514 ntBASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
NUDCD3Q8IVD9 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 GNAS-203ENST00000306120 1878 ntBASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 IKBKGP1-201ENST00000612193 1073 ntBASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
NUDCD3Q8IVD9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 AC112777.1-201ENST00000540175 1423 ntBASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 AC006970.2-201ENST00000450065 779 ntBASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 C1QL1P1-201ENST00000568105 661 ntBASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 FAM110A-203ENST00000381939 1737 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.49■□□□□ 0.55
NUDCD3Q8IVD9 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.48■□□□□ 0.55
NUDCD3Q8IVD9 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 58.6 ms