Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC11.65□□□□□ -0.55
LINC00643Q86TS7 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 TSPY4-202ENST00000426950 1179 ntAPPRIS P5 TSL 5 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 AP006261.1-201ENST00000584783 668 ntBASIC11.64□□□□□ -0.55
LINC00643Q86TS7 DUX4L11-201ENST00000611504 1267 ntBASIC11.64□□□□□ -0.55
LINC00643Q86TS7 DUX4L12-201ENST00000614593 1267 ntBASIC11.64□□□□□ -0.55
LINC00643Q86TS7 DUX4L14-201ENST00000621227 1267 ntBASIC11.64□□□□□ -0.55
LINC00643Q86TS7 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
LINC00643Q86TS7 AL662844.4-201ENST00000606367 2838 ntBASIC11.64□□□□□ -0.55
LINC00643Q86TS7 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 AC022616.5-201ENST00000518796 181 ntBASIC11.63□□□□□ -0.55
LINC00643Q86TS7 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
LINC00643Q86TS7 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 AC022188.1-201ENST00000620960 1664 ntBASIC11.62□□□□□ -0.55
LINC00643Q86TS7 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC11.62□□□□□ -0.55
LINC00643Q86TS7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC11.62□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms