Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC17.51■□□□□ 0.39
SOX3P41225 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 HMGA1P5-201ENST00000412453 271 ntBASIC17.51■□□□□ 0.39
SOX3P41225 LIN28AP1-201ENST00000429574 405 ntBASIC17.51■□□□□ 0.39
SOX3P41225 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17.51■□□□□ 0.39
SOX3P41225 AL353719.1-201ENST00000566847 864 ntBASIC17.51■□□□□ 0.39
SOX3P41225 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
SOX3P41225 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.51■□□□□ 0.39
SOX3P41225 AC010653.2-201ENST00000623505 997 ntBASIC17.51■□□□□ 0.39
SOX3P41225 AC092865.7-201ENST00000641832 219 ntBASIC17.51■□□□□ 0.39
SOX3P41225 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.51■□□□□ 0.39
SOX3P41225 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 AC135050.7-201ENST00000624508 2218 ntBASIC17.51■□□□□ 0.39
SOX3P41225 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX3P41225 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX3P41225 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX3P41225 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 FZD10-202ENST00000539839 3282 ntBASIC17.5■□□□□ 0.39
SOX3P41225 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.5■□□□□ 0.39
SOX3P41225 ATP5G1P1-201ENST00000448724 379 ntBASIC17.5■□□□□ 0.39
SOX3P41225 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX3P41225 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SOX3P41225 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX3P41225 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
SOX3P41225 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SOX3P41225 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 TEX21P-204ENST00000641479 1693 ntBASIC17.49■□□□□ 0.39
SOX3P41225 AC073508.3-201ENST00000619697 1419 ntBASIC17.49■□□□□ 0.39
SOX3P41225 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 AP003041.3-201ENST00000527151 707 ntBASIC17.49■□□□□ 0.39
SOX3P41225 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SOX3P41225 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX3P41225 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX3P41225 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX3P41225 PCDHB18P-201ENST00000524813 2368 ntBASIC17.48■□□□□ 0.39
SOX3P41225 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SOX3P41225 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
SOX3P41225 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX3P41225 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms