Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH3P20585 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH3P20585 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH3P20585 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH3P20585 AC036111.1-201ENST00000533973 1582 ntBASIC18.52■□□□□ 0.56
MSH3P20585 KRT8P45-201ENST00000414328 1447 ntBASIC18.52■□□□□ 0.56
MSH3P20585 AC113347.1-201ENST00000413321 391 ntBASIC18.52■□□□□ 0.56
MSH3P20585 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH3P20585 CR769767.2-201ENST00000622735 460 ntBASIC18.52■□□□□ 0.56
MSH3P20585 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH3P20585 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
MSH3P20585 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.52■□□□□ 0.56
MSH3P20585 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
MSH3P20585 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSH3P20585 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.55
MSH3P20585 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
MSH3P20585 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC18.52■□□□□ 0.55
MSH3P20585 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.51■□□□□ 0.55
MSH3P20585 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSH3P20585 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.51■□□□□ 0.55
MSH3P20585 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
MSH3P20585 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.51■□□□□ 0.55
MSH3P20585 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
MSH3P20585 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.51■□□□□ 0.55
MSH3P20585 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
MSH3P20585 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.51■□□□□ 0.55
MSH3P20585 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
MSH3P20585 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
MSH3P20585 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH3P20585 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.5■□□□□ 0.55
MSH3P20585 Z98044.1-201ENST00000632503 1764 ntBASIC18.5■□□□□ 0.55
MSH3P20585 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.5■□□□□ 0.55
MSH3P20585 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH3P20585 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.5■□□□□ 0.55
MSH3P20585 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
MSH3P20585 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
MSH3P20585 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.5■□□□□ 0.55
MSH3P20585 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.5■□□□□ 0.55
MSH3P20585 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
MSH3P20585 AC090340.1-201ENST00000620778 4980 ntBASIC18.5■□□□□ 0.55
MSH3P20585 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
MSH3P20585 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC18.5■□□□□ 0.55
MSH3P20585 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.5■□□□□ 0.55
MSH3P20585 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 AL031598.1-201ENST00000561511 1773 ntBASIC18.5■□□□□ 0.55
MSH3P20585 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
MSH3P20585 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.49■□□□□ 0.55
MSH3P20585 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH3P20585 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC18.49■□□□□ 0.55
MSH3P20585 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 AC005521.1-201ENST00000393351 872 ntBASIC18.49■□□□□ 0.55
MSH3P20585 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC18.49■□□□□ 0.55
MSH3P20585 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 WWOX-216ENST00000569818 525 ntBASIC18.49■□□□□ 0.55
MSH3P20585 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
MSH3P20585 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
MSH3P20585 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
MSH3P20585 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms