Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.71■□□□□ 0.59
VIMP08670 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.71■□□□□ 0.59
VIMP08670 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC18.71■□□□□ 0.59
VIMP08670 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC18.71■□□□□ 0.59
VIMP08670 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.71■□□□□ 0.59
VIMP08670 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.71■□□□□ 0.59
VIMP08670 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
VIMP08670 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC18.71■□□□□ 0.59
VIMP08670 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VIMP08670 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.71■□□□□ 0.58
VIMP08670 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
VIMP08670 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.7■□□□□ 0.58
VIMP08670 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VIMP08670 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VIMP08670 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 AC141586.5-201ENST00000624546 2050 ntBASIC18.7■□□□□ 0.58
VIMP08670 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 JTB-203ENST00000368589 1216 ntTSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.7■□□□□ 0.58
VIMP08670 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.7■□□□□ 0.58
VIMP08670 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.7■□□□□ 0.58
VIMP08670 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VIMP08670 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
VIMP08670 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VIMP08670 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.69■□□□□ 0.58
VIMP08670 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.69■□□□□ 0.58
VIMP08670 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VIMP08670 FLYWCH1P1-201ENST00000460917 1874 ntBASIC18.69■□□□□ 0.58
VIMP08670 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.69■□□□□ 0.58
VIMP08670 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 AC068338.2-201ENST00000563278 1430 ntBASIC18.69■□□□□ 0.58
VIMP08670 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.69■□□□□ 0.58
VIMP08670 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.69■□□□□ 0.58
VIMP08670 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.69■□□□□ 0.58
VIMP08670 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VIMP08670 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.69■□□□□ 0.58
VIMP08670 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VIMP08670 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VIMP08670 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
VIMP08670 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.68■□□□□ 0.58
VIMP08670 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
VIMP08670 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC18.68■□□□□ 0.58
VIMP08670 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.68■□□□□ 0.58
VIMP08670 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18.68■□□□□ 0.58
VIMP08670 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC18.68■□□□□ 0.58
VIMP08670 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC18.68■□□□□ 0.58
VIMP08670 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.68■□□□□ 0.58
VIMP08670 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VIMP08670 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
VIMP08670 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC18.68■□□□□ 0.58
VIMP08670 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms