Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
RNF40O75150 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.07■□□□□ 0.8
RNF40O75150 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
RNF40O75150 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RNF40O75150 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RNF40O75150 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.07■□□□□ 0.8
RNF40O75150 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
RNF40O75150 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF40O75150 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF40O75150 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF40O75150 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF40O75150 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF40O75150 AC026271.3-201ENST00000571884 352 ntBASIC20.06■□□□□ 0.8
RNF40O75150 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF40O75150 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.06■□□□□ 0.8
RNF40O75150 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.06■□□□□ 0.8
RNF40O75150 AL445675.2-201ENST00000620291 557 ntBASIC20.06■□□□□ 0.8
RNF40O75150 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF40O75150 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RNF40O75150 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RNF40O75150 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC20.06■□□□□ 0.8
RNF40O75150 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC20.05■□□□□ 0.8
RNF40O75150 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC20.05■□□□□ 0.8
RNF40O75150 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
RNF40O75150 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
RNF40O75150 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
RNF40O75150 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.05■□□□□ 0.8
RNF40O75150 DUX4L26-201ENST00000489078 1255 ntBASIC20.05■□□□□ 0.8
RNF40O75150 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.05■□□□□ 0.8
RNF40O75150 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC20.05■□□□□ 0.8
RNF40O75150 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RNF40O75150 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
RNF40O75150 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
RNF40O75150 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF40O75150 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
RNF40O75150 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.04■□□□□ 0.8
RNF40O75150 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.04■□□□□ 0.8
RNF40O75150 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 AC010203.1-204ENST00000548782 407 ntBASIC20.04■□□□□ 0.8
RNF40O75150 C2orf69P3-201ENST00000565542 1120 ntBASIC20.04■□□□□ 0.8
RNF40O75150 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.04■□□□□ 0.8
RNF40O75150 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC20.04■□□□□ 0.8
RNF40O75150 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC20.04■□□□□ 0.8
RNF40O75150 DHRS12-201ENST00000218981 1970 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF40O75150 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
RNF40O75150 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF40O75150 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.04■□□□□ 0.8
RNF40O75150 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RNF40O75150 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
RNF40O75150 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
RNF40O75150 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF40O75150 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.03■□□□□ 0.8
RNF40O75150 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF40O75150 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
RNF40O75150 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.03■□□□□ 0.8
RNF40O75150 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC20.03■□□□□ 0.8
RNF40O75150 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms