Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC16.38■□□□□ 0.21
LMX1BO60663 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
LMX1BO60663 KRT18P57-201ENST00000443599 1254 ntBASIC16.38■□□□□ 0.21
LMX1BO60663 KSR1P1-201ENST00000446298 240 ntBASIC16.38■□□□□ 0.21
LMX1BO60663 Z85996.1-201ENST00000494644 937 ntBASIC16.38■□□□□ 0.21
LMX1BO60663 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1BO60663 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.38■□□□□ 0.21
LMX1BO60663 DUT-205ENST00000558813 769 ntTSL 2 BASIC16.38■□□□□ 0.21
LMX1BO60663 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC16.38■□□□□ 0.21
LMX1BO60663 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LMX1BO60663 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
LMX1BO60663 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LMX1BO60663 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC16.37■□□□□ 0.21
LMX1BO60663 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 CRAT-202ENST00000393384 973 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC16.37■□□□□ 0.21
LMX1BO60663 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.37■□□□□ 0.21
LMX1BO60663 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC16.37■□□□□ 0.21
LMX1BO60663 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 FITM1-202ENST00000559294 800 ntBASIC16.37■□□□□ 0.21
LMX1BO60663 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC16.37■□□□□ 0.21
LMX1BO60663 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
LMX1BO60663 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.37■□□□□ 0.21
LMX1BO60663 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.37■□□□□ 0.21
LMX1BO60663 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC16.37■□□□□ 0.21
LMX1BO60663 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LMX1BO60663 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC16.37■□□□□ 0.21
LMX1BO60663 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1BO60663 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.36■□□□□ 0.21
LMX1BO60663 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
LMX1BO60663 RCC2P6-201ENST00000526625 1557 ntBASIC16.36■□□□□ 0.21
LMX1BO60663 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC16.36■□□□□ 0.21
LMX1BO60663 AC116562.2-201ENST00000507042 360 ntBASIC16.36■□□□□ 0.21
LMX1BO60663 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1BO60663 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.36■□□□□ 0.21
LMX1BO60663 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LMX1BO60663 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
LMX1BO60663 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 PPM1G-201ENST00000344034 2311 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1BO60663 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC16.36■□□□□ 0.21
LMX1BO60663 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC16.36■□□□□ 0.21
LMX1BO60663 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 KRT16P1-201ENST00000399124 1418 ntBASIC16.36■□□□□ 0.21
LMX1BO60663 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LMX1BO60663 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC16.35■□□□□ 0.21
LMX1BO60663 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
LMX1BO60663 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
LMX1BO60663 HEIH-201ENST00000623091 1652 ntBASIC16.35■□□□□ 0.21
LMX1BO60663 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms