Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC007663.1-201ENST00000438948 1240 ntBASIC20.66■□□□□ 0.9
HPS3Q969F9 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
HPS3Q969F9 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HPS3Q969F9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HPS3Q969F9 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
HPS3Q969F9 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC20.65■□□□□ 0.9
HPS3Q969F9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC20.65■□□□□ 0.9
HPS3Q969F9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
HPS3Q969F9 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
HPS3Q969F9 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HPS3Q969F9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC20.65■□□□□ 0.9
HPS3Q969F9 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.65■□□□□ 0.9
HPS3Q969F9 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 SLC25A1P2-201ENST00000430693 912 ntBASIC20.65■□□□□ 0.9
HPS3Q969F9 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.65■□□□□ 0.9
HPS3Q969F9 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.65■□□□□ 0.9
HPS3Q969F9 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
HPS3Q969F9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HPS3Q969F9 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HPS3Q969F9 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HPS3Q969F9 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
HPS3Q969F9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
HPS3Q969F9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
HPS3Q969F9 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 MMP23A-201ENST00000234610 1017 ntBASIC20.64■□□□□ 0.89
HPS3Q969F9 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 MIR564-202ENST00000385049 94 ntBASIC20.64■□□□□ 0.89
HPS3Q969F9 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC20.64■□□□□ 0.89
HPS3Q969F9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.64■□□□□ 0.89
HPS3Q969F9 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HPS3Q969F9 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.64■□□□□ 0.89
HPS3Q969F9 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
HPS3Q969F9 RNF135-201ENST00000324689 1905 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HPS3Q969F9 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
HPS3Q969F9 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC20.63■□□□□ 0.89
HPS3Q969F9 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 BX088651.1-201ENST00000540551 451 ntBASIC20.63■□□□□ 0.89
HPS3Q969F9 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.63■□□□□ 0.89
HPS3Q969F9 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
HPS3Q969F9 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.63■□□□□ 0.89
HPS3Q969F9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HPS3Q969F9 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.63■□□□□ 0.89
HPS3Q969F9 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.62■□□□□ 0.89
HPS3Q969F9 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.62■□□□□ 0.89
HPS3Q969F9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.62■□□□□ 0.89
HPS3Q969F9 ELP6-205ENST00000439305 880 ntTSL 2 BASIC20.62■□□□□ 0.89
HPS3Q969F9 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HPS3Q969F9 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms