Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC21.16■□□□□ 0.98
ERCC4Q92889 AC124016.1-201ENST00000609552 612 ntBASIC21.16■□□□□ 0.98
ERCC4Q92889 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC4Q92889 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC4Q92889 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC4Q92889 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ERCC4Q92889 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC21.16■□□□□ 0.98
ERCC4Q92889 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
ERCC4Q92889 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.15■□□□□ 0.98
ERCC4Q92889 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
ERCC4Q92889 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
ERCC4Q92889 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
ERCC4Q92889 ESRRAP1-201ENST00000400596 1257 ntBASIC21.15■□□□□ 0.98
ERCC4Q92889 DENND3-207ENST00000518347 850 ntTSL 2 BASIC21.15■□□□□ 0.98
ERCC4Q92889 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.15■□□□□ 0.98
ERCC4Q92889 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 NOC2LP2-201ENST00000407594 1944 ntBASIC21.15■□□□□ 0.98
ERCC4Q92889 AC073592.3-201ENST00000625118 1834 ntBASIC21.15■□□□□ 0.98
ERCC4Q92889 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
ERCC4Q92889 TYMS-203ENST00000323274 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ERCC4Q92889 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.14■□□□□ 0.98
ERCC4Q92889 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
ERCC4Q92889 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.14■□□□□ 0.98
ERCC4Q92889 LTB4R2-202ENST00000528054 3092 ntBASIC21.14■□□□□ 0.98
ERCC4Q92889 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
ERCC4Q92889 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.14■□□□□ 0.98
ERCC4Q92889 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC21.14■□□□□ 0.97
ERCC4Q92889 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 KRT18P6-201ENST00000555540 1265 ntBASIC21.14■□□□□ 0.97
ERCC4Q92889 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC21.14■□□□□ 0.97
ERCC4Q92889 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.14■□□□□ 0.97
ERCC4Q92889 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
ERCC4Q92889 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.14■□□□□ 0.97
ERCC4Q92889 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
ERCC4Q92889 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.14■□□□□ 0.97
ERCC4Q92889 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
ERCC4Q92889 ABALON-201ENST00000629058 1903 ntBASIC21.14■□□□□ 0.97
ERCC4Q92889 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ERCC4Q92889 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
ERCC4Q92889 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
ERCC4Q92889 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
ERCC4Q92889 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 KRT16P5-201ENST00000455284 522 ntBASIC21.13■□□□□ 0.97
ERCC4Q92889 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
ERCC4Q92889 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC21.13■□□□□ 0.97
ERCC4Q92889 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.13■□□□□ 0.97
ERCC4Q92889 AC068587.9-201ENST00000641814 219 ntBASIC21.13■□□□□ 0.97
ERCC4Q92889 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
ERCC4Q92889 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
ERCC4Q92889 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.13■□□□□ 0.97
ERCC4Q92889 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ERCC4Q92889 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC21.13■□□□□ 0.97
ERCC4Q92889 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
ERCC4Q92889 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ERCC4Q92889 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC21.12■□□□□ 0.97
ERCC4Q92889 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms