Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
ABCA4P78363 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 AL158211.5-201ENST00000623583 2518 ntBASIC16.03■□□□□ 0.16
ABCA4P78363 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
ABCA4P78363 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
ABCA4P78363 GRAMD4P1-201ENST00000435181 1110 ntBASIC16.03■□□□□ 0.16
ABCA4P78363 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC16.03■□□□□ 0.16
ABCA4P78363 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.03■□□□□ 0.16
ABCA4P78363 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC16.03■□□□□ 0.16
ABCA4P78363 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 LINC01521-201ENST00000504184 1943 ntBASIC16.03■□□□□ 0.16
ABCA4P78363 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ABCA4P78363 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ABCA4P78363 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC16.03■□□□□ 0.16
ABCA4P78363 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC16.02■□□□□ 0.16
ABCA4P78363 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
ABCA4P78363 PMS2P1-201ENST00000431037 1228 ntBASIC16.02■□□□□ 0.16
ABCA4P78363 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC16.02■□□□□ 0.16
ABCA4P78363 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.02■□□□□ 0.16
ABCA4P78363 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ABCA4P78363 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC16.02■□□□□ 0.15
ABCA4P78363 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ABCA4P78363 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
ABCA4P78363 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
ABCA4P78363 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
ABCA4P78363 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ABCA4P78363 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
ABCA4P78363 KRT18P23-201ENST00000435622 1283 ntBASIC16.02■□□□□ 0.15
ABCA4P78363 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.02■□□□□ 0.15
ABCA4P78363 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC16.02■□□□□ 0.15
ABCA4P78363 AC074051.2-201ENST00000565115 352 ntBASIC16.02■□□□□ 0.15
ABCA4P78363 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.15
ABCA4P78363 LITAF-220ENST00000620789 692 ntTSL 5 BASIC16.02■□□□□ 0.15
ABCA4P78363 HLA-A-201ENST00000376802 1334 ntBASIC16.02■□□□□ 0.15
ABCA4P78363 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.02■□□□□ 0.15
ABCA4P78363 AC008556.1-201ENST00000610908 2040 ntBASIC16.02■□□□□ 0.15
ABCA4P78363 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
ABCA4P78363 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
ABCA4P78363 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.01■□□□□ 0.15
ABCA4P78363 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC16.01■□□□□ 0.15
ABCA4P78363 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
ABCA4P78363 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.01■□□□□ 0.15
ABCA4P78363 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.01■□□□□ 0.15
ABCA4P78363 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 LINC01711-201ENST00000598340 967 ntBASIC16.01■□□□□ 0.15
ABCA4P78363 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.01■□□□□ 0.15
ABCA4P78363 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 KRT8P7-201ENST00000533003 1432 ntBASIC16.01■□□□□ 0.15
ABCA4P78363 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 PRRT1-201ENST00000211413 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
ABCA4P78363 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC16.01■□□□□ 0.15
ABCA4P78363 KRT18P13-201ENST00000400056 1290 ntBASIC16.01■□□□□ 0.15
ABCA4P78363 MRPL3P1-201ENST00000400109 1033 ntBASIC16.01■□□□□ 0.15
ABCA4P78363 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC16.01■□□□□ 0.15
ABCA4P78363 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.01■□□□□ 0.15
ABCA4P78363 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.01■□□□□ 0.15
ABCA4P78363 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC16.01■□□□□ 0.15
ABCA4P78363 AC091304.2-201ENST00000564639 760 ntBASIC16.01■□□□□ 0.15
ABCA4P78363 AC233702.3-201ENST00000578656 1387 ntBASIC16.01■□□□□ 0.15
ABCA4P78363 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ABCA4P78363 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
ABCA4P78363 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
ABCA4P78363 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms